I bet your master cylinder throw is not adjusted correctly. Judging by the set nut being in the wrong location. If the throw isn't set properly the valve in the master doesn't allow flow back to the master decreasing the distance that the clutch will disengage the next time you apply your clutch pedal.
Grab a friend and follow the master cylinder setup process outlined by these guys just following the bleeding process in this video:
Grab a friend and follow the master cylinder setup process outlined by these guys just following the bleeding process in this video: